Package: GeNetIt 0.1-6

GeNetIt: Spatial Graph-Theoretic Genetic Gravity Modelling

Implementation of spatial graph-theoretic genetic gravity models. The model framework is applicable for other types of spatial flow questions. Includes functions for constructing spatial graphs, sampling and summarizing associated raster variables and building unconstrained and singly constrained gravity models.

Authors:Jeffrey S. Evans [aut, cre], Melanie Murphy [aut]

GeNetIt_0.1-6.tar.gz
GeNetIt_0.1-6.zip(r-4.5)GeNetIt_0.1-6.zip(r-4.4)GeNetIt_0.1-6.zip(r-4.3)
GeNetIt_0.1-6.tgz(r-4.4-any)GeNetIt_0.1-6.tgz(r-4.3-any)
GeNetIt_0.1-6.tar.gz(r-4.5-noble)GeNetIt_0.1-6.tar.gz(r-4.4-noble)
GeNetIt_0.1-6.tgz(r-4.4-emscripten)GeNetIt_0.1-6.tgz(r-4.3-emscripten)
GeNetIt.pdf |GeNetIt.html✨
GeNetIt/json (API)
NEWS

# Install 'GeNetIt' in R:

install.packages('GeNetIt', repos = c('https://jeffreyevans.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jeffreyevans/genetit/issues

Datasets:

dps - Dps genetic distance matrix for Columbia spotted frog
ralu.model - Columbia spotted frog (Rana luteiventris) data for specifying gravity model. Note, the data.frame is already log transformed.
ralu.site - Subset of site-level spatial point data for Columbia spotted frog

On CRAN:

landscape-genetics r-spatial spatial statistics

12 exports 9 stars 1.59 score 51 dependencies 1 mentions 35 scripts 240 downloads

Last updated 1 years agofrom:3bf2831bee. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 06 2024
R-4.5-win	OK	Sep 06 2024
R-4.5-linux	OK	Sep 06 2024
R-4.4-win	OK	Sep 06 2024
R-4.4-mac	OK	Sep 06 2024
R-4.3-win	OK	Sep 06 2024
R-4.3-mac	OK	Sep 06 2024

Exports:adj_matrix area.graph.statistics build.node.data compare.models dmatrix.df flow graph.metrics graph.statistics gravity gravity.es knn.graph node.statistics

Dependencies:boot class classInt cli cpp11 crayon DBI deldir dplyr e1071 exactextractr fansi generics geometries glue igraph KernSmooth lattice lifecycle lwgeom magrittr MASS Matrix nlme pillar pkgconfig proxy purrr R6 raster Rcpp rlang s2 sf sfheaders sfnetworks sp spData spdep stringi stringr terra tibble tidygraph tidyr tidyselect units utf8 vctrs withr wk

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Binary adjacency matrix	adj_matrix
Statistics for edges (lines) based on a defined scale (area).	area.graph.statistics
Build node data	build.node.data
Compare gravity models	compare.models
Subset of raster data for Columbia spotted frog (Rana luteiventris)	covariates
Distance matrix to data.frame	dmatrix.df
dps genetic distance matrix for Columbia spotted frog (Rana luteiventris)	dps
Convert distance to flow	flow
Graph Metrics	graph.metrics
Statistics for edges (lines)	graph.statistics
Gravity model	gravity
Effect Size	gravity.es
Saturated or K Nearest Neighbor Graph	knn.graph
raster statistics for nodes	node.statistics
Plot gravity model	plot.gravity
Predict gravity model	predict.gravity
Print gravity model	print.gravity
Columbia spotted frog (Rana luteiventris) data for specifying gravity model. Note, the data.frame is already log transformed.	ralu.model
Subset of site-level spatial point data for Columbia spotted frog (Rana luteiventris)	ralu.site
Summarizing Gravity Model Fits	summary.gravity