Package: GeNetIt 0.1-6
GeNetIt: Spatial Graph-Theoretic Genetic Gravity Modelling
Implementation of spatial graph-theoretic genetic gravity models. The model framework is applicable for other types of spatial flow questions. Includes functions for constructing spatial graphs, sampling and summarizing associated raster variables and building unconstrained and singly constrained gravity models.
Authors:
GeNetIt_0.1-6.tar.gz
GeNetIt_0.1-6.zip(r-4.5)GeNetIt_0.1-6.zip(r-4.4)GeNetIt_0.1-6.zip(r-4.3)
GeNetIt_0.1-6.tgz(r-4.4-any)GeNetIt_0.1-6.tgz(r-4.3-any)
GeNetIt_0.1-6.tar.gz(r-4.5-noble)GeNetIt_0.1-6.tar.gz(r-4.4-noble)
GeNetIt_0.1-6.tgz(r-4.4-emscripten)GeNetIt_0.1-6.tgz(r-4.3-emscripten)
GeNetIt.pdf |GeNetIt.html✨
GeNetIt/json (API)
NEWS
| # Install 'GeNetIt' in R: |
| install.packages('GeNetIt', repos = c('https://jeffreyevans.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jeffreyevans/genetit/issues
- dps - Dps genetic distance matrix for Columbia spotted frog
- ralu.model - Columbia spotted frog (Rana luteiventris) data for specifying gravity model. Note, the data.frame is already log transformed.
- ralu.site - Subset of site-level spatial point data for Columbia spotted frog
landscape-geneticsr-spatialspatialstatistics
Last updated 1 years agofrom:3bf2831bee. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 05 2024 |
| R-4.5-win | OK | Nov 05 2024 |
| R-4.5-linux | OK | Nov 05 2024 |
| R-4.4-win | OK | Nov 05 2024 |
| R-4.4-mac | OK | Nov 05 2024 |
| R-4.3-win | OK | Nov 05 2024 |
| R-4.3-mac | OK | Nov 05 2024 |
Exports:adj_matrixarea.graph.statisticsbuild.node.datacompare.modelsdmatrix.dfflowgraph.metricsgraph.statisticsgravitygravity.esknn.graphnode.statistics
Dependencies:bootclassclassIntclicpp11crayonDBIdeldirdplyre1071exactextractrfansigenericsgeometriesglueigraphKernSmoothlatticelifecyclelwgeommagrittrMASSMatrixnlmepillarpkgconfigproxypurrrR6rasterRcpprlangs2sfsfheaderssfnetworksspspDataspdepstringistringrterratibbletidygraphtidyrtidyselectunitsutf8vctrswithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Binary adjacency matrix | adj_matrix |
| Statistics for edges (lines) based on a defined scale (area). | area.graph.statistics |
| Build node data | build.node.data |
| Compare gravity models | compare.models |
| Subset of raster data for Columbia spotted frog (Rana luteiventris) | covariates |
| Distance matrix to data.frame | dmatrix.df |
| dps genetic distance matrix for Columbia spotted frog (Rana luteiventris) | dps |
| Convert distance to flow | flow |
| Graph Metrics | graph.metrics |
| Statistics for edges (lines) | graph.statistics |
| Gravity model | gravity |
| Effect Size | gravity.es |
| Saturated or K Nearest Neighbor Graph | knn.graph |
| raster statistics for nodes | node.statistics |
| Plot gravity model | plot.gravity |
| Predict gravity model | predict.gravity |
| Print gravity model | print.gravity |
| Columbia spotted frog (Rana luteiventris) data for specifying gravity model. Note, the data.frame is already log transformed. | ralu.model |
| Subset of site-level spatial point data for Columbia spotted frog (Rana luteiventris) | ralu.site |
| Summarizing Gravity Model Fits | summary.gravity |
